PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548115.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 652aa    MW: 73718.6 Da    PI: 4.7154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548115.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-13330375555
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     + ++ErrRR+++N+++ +Lr+l+Pk +      Kl+ a+iLe A++++k+Lq
  XP_010548115.1 330 NLMAERRRRKKLNDRLYTLRSLVPKiS------KLDRASILEDAINFVKELQ 375
                     5589*********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-1810161IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.202325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-13327377No hitNo description
SuperFamilySSF474591.96E-16328386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10330375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-15331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-15332386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MESTIQNLLE KLRSLVGTRG WDYCVLWKLS DDQRFVKWLG CCCGGAEEII SNFDGNDNGG  60
EGFCFSSGVP SRCRDVMFHH PRTKSCELLA NLPVSIPLES GIHTETLVSN QTAWLNFSDR  120
SEPEFLQETT CTRVLIPMPG GLVELFVTRQ VSEDQHIVDF VMRECNFLLD HTSIGALSMN  180
MMGAEKVESK PYEISEGFEH KGAKEDMNLS FVQLGEYEVE HIKLKNDYQE LGFLPENKHM  240
GMNPFNLVVA EDEIIGMEAL HNSMGVGAVD MHNVEGCDPS LQVKEQDDKE TFSHENGRLE  300
LGSDCSDQMD DEDDAKFKQE KIGKGSQAKN LMAERRRRKK LNDRLYTLRS LVPKISKLDR  360
ASILEDAINF VKELQNEAKE LQEELEDNLD TNDGSNRHNG DVAIGGNNDL VKGFHSGLSC  420
NTTNVPNLKQ DMDPNQSSNE KEQKMEPQVD VAQVDRKEFF VKVICEYKSG IFTKLIEAMD  480
SLGFEVTNAN TTRLLGLVSN VFKVKRKDSE MVQAEHVRDS LLEITRNTSR GWHGGGDDDD  540
HIGFHWAEDG FEETANTQDL KVTIDEISEL MNNVRLRQND KKNQRPRLLE KRKLGESTVQ  600
DLEIHGGKHD DTLVGNFARK DSEKPNRISE NSDIFTEAMA NYLKHVINVS NI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333340ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548115.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLV4LJU20.0V4LJU2_EUTSA; Uncharacterized protein
STRINGBra002004.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein